STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (406 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase.
 
 
 0.999
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
 
 0.988
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 
 0.953
argR
Arginine repressor ArgR; Regulates arginine biosynthesis genes.
  
  
 0.943
Ljam_2247
ABC transporter ATP-binding protein.
  
  
 0.906
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.868
Ljam_1278
Hypothetical protein.
  
 
 0.853
Ljam_2248
Amino acid (glutamine) ABC transporter permease.
  
  
 0.850
yqiX
Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
    0.844
carA
Carbamoyl phosphate synthase, small subunit; Belongs to the CarA family.
  
 
 0.823
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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