Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2252Hypothetical protein. (175 aa)    
Predicted Functional Partners:
Ljam_2254
Methyltransferase.
 
     0.719
Ljam_2253
ABC transporter permease.
       0.706
engA
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
    0.703
Ljam_2251
Multidrug resistance ABC transporter ATP-binding protein.
       0.634
Ljam_2256
ABC transporter permease.
       0.587
Ljam_2257
ABC transporter ATP binding protein.
       0.587
Ljam_0458
Putative asmA protein.
  
     0.542
Ljam_2137
Hypothetical protein.
  
     0.503
Ljam_1802
Ninein.
  
     0.500
Ljam_1638
Interaptin.
  
     0.496
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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