Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_2281 | Ljam_0503 | Ljam_2281 | Polyketide synthase. | YcaC related amidohydrolase. | 0.767 |
Ljam_0503 | Ljam_2282 | Ljam_0503 | Ljam_2282 | Polyketide synthase. | 3-oxoacyl-ACP reductase. | 0.893 |
Ljam_0503 | Ljam_2538 | Ljam_0503 | Ljam_2538 | Polyketide synthase. | Isochorismatase family protein. | 0.798 |
Ljam_0503 | birA | Ljam_0503 | Ljam_0994 | Polyketide synthase. | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.726 |
Ljam_0503 | nadE | Ljam_0503 | Ljam_1041 | Polyketide synthase. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.884 |
Ljam_0503 | trpE | Ljam_0503 | Ljam_2294 | Polyketide synthase. | Anthranilate synthase. | 0.892 |
Ljam_0503 | yjeF | Ljam_0503 | Ljam_0268 | Polyketide synthase. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.700 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_2281 | Ljam_1060 | Ljam_2281 | Polyketide synthase. | YcaC related amidohydrolase. | 0.767 |
Ljam_1060 | Ljam_2282 | Ljam_1060 | Ljam_2282 | Polyketide synthase. | 3-oxoacyl-ACP reductase. | 0.893 |
Ljam_1060 | Ljam_2538 | Ljam_1060 | Ljam_2538 | Polyketide synthase. | Isochorismatase family protein. | 0.800 |
Ljam_1060 | birA | Ljam_1060 | Ljam_0994 | Polyketide synthase. | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.726 |
Ljam_1060 | nadE | Ljam_1060 | Ljam_1041 | Polyketide synthase. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.884 |
Ljam_1060 | trpE | Ljam_1060 | Ljam_2294 | Polyketide synthase. | Anthranilate synthase. | 0.892 |
Ljam_1060 | yjeF | Ljam_1060 | Ljam_0268 | Polyketide synthase. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.700 |
Ljam_2281 | Ljam_0503 | Ljam_2281 | Ljam_0503 | YcaC related amidohydrolase. | Polyketide synthase. | 0.767 |
Ljam_2281 | Ljam_1060 | Ljam_2281 | Ljam_1060 | YcaC related amidohydrolase. | Polyketide synthase. | 0.767 |
Ljam_2281 | Ljam_2282 | Ljam_2281 | Ljam_2282 | YcaC related amidohydrolase. | 3-oxoacyl-ACP reductase. | 0.750 |
Ljam_2281 | Ljam_2538 | Ljam_2281 | Ljam_2538 | YcaC related amidohydrolase. | Isochorismatase family protein. | 0.648 |
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