Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_0791 | Ljam_0503 | Ljam_0791 | Polyketide synthase. | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.829 |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_1149 | Ljam_0503 | Ljam_1149 | Polyketide synthase. | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.999 |
Ljam_0503 | Ljam_2320 | Ljam_0503 | Ljam_2320 | Polyketide synthase. | Spermidine synthase. | 0.437 |
Ljam_0503 | astD | Ljam_0503 | Ljam_2322 | Polyketide synthase. | Succinylglutamic-5-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.887 |
Ljam_0503 | cpg2 | Ljam_0503 | Ljam_2324 | Polyketide synthase. | Carboxypeptidase G2. | 0.475 |
Ljam_0503 | iolG | Ljam_0503 | Ljam_1012 | Polyketide synthase. | Myo-inositol-2-dehydrogenase. | 0.900 |
Ljam_0503 | korA | Ljam_0503 | Ljam_1323 | Polyketide synthase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.826 |
Ljam_0791 | Ljam_0503 | Ljam_0791 | Ljam_0503 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Polyketide synthase. | 0.829 |
Ljam_0791 | Ljam_1060 | Ljam_0791 | Ljam_1060 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Polyketide synthase. | 0.829 |
Ljam_0791 | Ljam_1149 | Ljam_0791 | Ljam_1149 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.780 |
Ljam_0791 | astB | Ljam_0791 | Ljam_2321 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). | 0.517 |
Ljam_0791 | astD | Ljam_0791 | Ljam_2322 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Succinylglutamic-5-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.792 |
Ljam_0791 | korA | Ljam_0791 | Ljam_1323 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.459 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_0791 | Ljam_1060 | Ljam_0791 | Polyketide synthase. | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.829 |
Ljam_1060 | Ljam_1149 | Ljam_1060 | Ljam_1149 | Polyketide synthase. | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.999 |
Ljam_1060 | Ljam_2320 | Ljam_1060 | Ljam_2320 | Polyketide synthase. | Spermidine synthase. | 0.437 |
Ljam_1060 | astD | Ljam_1060 | Ljam_2322 | Polyketide synthase. | Succinylglutamic-5-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.887 |
Ljam_1060 | cpg2 | Ljam_1060 | Ljam_2324 | Polyketide synthase. | Carboxypeptidase G2. | 0.475 |
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