Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_0522 | Ljam_0503 | Ljam_0522 | Polyketide synthase. | Isochorismatase. | 0.793 |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_2333 | Ljam_0503 | Ljam_2333 | Polyketide synthase. | Bifunctional pyrazinamidase/nicotinamidase. | 0.767 |
Ljam_0503 | Ljam_2622 | Ljam_0503 | Ljam_2622 | Polyketide synthase. | Oxaloacetate decarboxylase subunit alpha. | 0.885 |
Ljam_0503 | gatA | Ljam_0503 | Ljam_2290 | Polyketide synthase. | aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.905 |
Ljam_0503 | nadE | Ljam_0503 | Ljam_1041 | Polyketide synthase. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.884 |
Ljam_0503 | trpE | Ljam_0503 | Ljam_2294 | Polyketide synthase. | Anthranilate synthase. | 0.892 |
Ljam_0522 | Ljam_0503 | Ljam_0522 | Ljam_0503 | Isochorismatase. | Polyketide synthase. | 0.793 |
Ljam_0522 | Ljam_1060 | Ljam_0522 | Ljam_1060 | Isochorismatase. | Polyketide synthase. | 0.794 |
Ljam_0522 | Ljam_2332 | Ljam_0522 | Ljam_2332 | Isochorismatase. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.514 |
Ljam_0522 | Ljam_2333 | Ljam_0522 | Ljam_2333 | Isochorismatase. | Bifunctional pyrazinamidase/nicotinamidase. | 0.512 |
Ljam_0522 | Ljam_2622 | Ljam_0522 | Ljam_2622 | Isochorismatase. | Oxaloacetate decarboxylase subunit alpha. | 0.563 |
Ljam_0522 | apc3 | Ljam_0522 | Ljam_1707 | Isochorismatase. | Acetophenone carboxylase gamma subunit. | 0.710 |
Ljam_0522 | gatA | Ljam_0522 | Ljam_2290 | Isochorismatase. | aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.593 |
Ljam_0522 | nadE | Ljam_0522 | Ljam_1041 | Isochorismatase. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.516 |
Ljam_0522 | trpE | Ljam_0522 | Ljam_2294 | Isochorismatase. | Anthranilate synthase. | 0.575 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_0522 | Ljam_1060 | Ljam_0522 | Polyketide synthase. | Isochorismatase. | 0.794 |
Ljam_1060 | Ljam_2333 | Ljam_1060 | Ljam_2333 | Polyketide synthase. | Bifunctional pyrazinamidase/nicotinamidase. | 0.767 |
Ljam_1060 | Ljam_2622 | Ljam_1060 | Ljam_2622 | Polyketide synthase. | Oxaloacetate decarboxylase subunit alpha. | 0.885 |
page 1 of 4