STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2336Hemolysin D. (415 aa)    
Predicted Functional Partners:
Ljam_2334
ABC transporter.
 
 0.979
Ljam_2335
Hypothetical protein; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 0.979
Ljam_1879
ABC transporter.
 
 0.762
Ljam_2865
Outer membrane protein TolC.
  
 0.654
Ljam_1657
Toxin secretion ABC transporter HlyB/MsbA family transporter ATP-binding protein.
  
 0.597
Ljam_1972
Outer membrane efflux protein.
  
  0.519
Ljam_1510
Chemiosmotic efflux system B protein C.
   
  0.507
helC
HelC protein.
   
  0.507
Ljam_1659
Outer membrane component of multidrug efflux pump.
   
  0.507
Ljam_2612
Chemiosmotic efflux system protein C.
   
  0.507
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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