Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_2377 | Ljam_2379 | Ljam_2377 | Ljam_2379 | DNA-binding protein. | Transmembrane protein. | 0.834 |
| Ljam_2377 | bamB | Ljam_2377 | Ljam_2380 | DNA-binding protein. | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.757 |
| Ljam_2377 | engA | Ljam_2377 | Ljam_2381 | DNA-binding protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.759 |
| Ljam_2377 | hisS | Ljam_2377 | Ljam_2378 | DNA-binding protein. | histidyl-tRNA synthetase. | 0.816 |
| Ljam_2377 | pilF | Ljam_2377 | Ljam_2376 | DNA-binding protein. | Fimbrial biogenesis and twitching motility protein PilF. | 0.819 |
| Ljam_2379 | Ljam_2377 | Ljam_2379 | Ljam_2377 | Transmembrane protein. | DNA-binding protein. | 0.834 |
| Ljam_2379 | bamB | Ljam_2379 | Ljam_2380 | Transmembrane protein. | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.960 |
| Ljam_2379 | engA | Ljam_2379 | Ljam_2381 | Transmembrane protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.839 |
| Ljam_2379 | hisS | Ljam_2379 | Ljam_2378 | Transmembrane protein. | histidyl-tRNA synthetase. | 0.947 |
| Ljam_2379 | pilF | Ljam_2379 | Ljam_2376 | Transmembrane protein. | Fimbrial biogenesis and twitching motility protein PilF. | 0.771 |
| bamB | Ljam_2377 | Ljam_2380 | Ljam_2377 | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | DNA-binding protein. | 0.757 |
| bamB | Ljam_2379 | Ljam_2380 | Ljam_2379 | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Transmembrane protein. | 0.960 |
| bamB | engA | Ljam_2380 | Ljam_2381 | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.832 |
| bamB | hisS | Ljam_2380 | Ljam_2378 | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | histidyl-tRNA synthetase. | 0.841 |
| bamB | pilF | Ljam_2380 | Ljam_2376 | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Fimbrial biogenesis and twitching motility protein PilF. | 0.757 |
| cmk | engA | Ljam_0602 | Ljam_2381 | Cytidylate kinase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.984 |
| cmk | gpsA | Ljam_0602 | Ljam_2801 | Cytidylate kinase. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.404 |
| cmk | rluB | Ljam_0602 | Ljam_0884 | Cytidylate kinase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.859 |
| dnaG | engA | Ljam_2599 | Ljam_2381 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.924 |
| engA | Ljam_2377 | Ljam_2381 | Ljam_2377 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | DNA-binding protein. | 0.759 |
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