Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_2496 | Ljam_0503 | Ljam_2496 | Polyketide synthase. | Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.472 |
Ljam_0503 | bioA | Ljam_0503 | Ljam_2463 | Polyketide synthase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.855 |
Ljam_0503 | bioH_2 | Ljam_0503 | Ljam_2466 | Polyketide synthase. | Biotin biosynthesis protein BioH. | 0.973 |
Ljam_0503 | coaD | Ljam_0503 | Ljam_1603 | Polyketide synthase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.528 |
Ljam_0503 | coaE | Ljam_0503 | Ljam_2460 | Polyketide synthase. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.835 |
Ljam_0503 | polA | Ljam_0503 | Ljam_2062 | Polyketide synthase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.797 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_2496 | Ljam_1060 | Ljam_2496 | Polyketide synthase. | Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.472 |
Ljam_1060 | bioA | Ljam_1060 | Ljam_2463 | Polyketide synthase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.855 |
Ljam_1060 | bioH_2 | Ljam_1060 | Ljam_2466 | Polyketide synthase. | Biotin biosynthesis protein BioH. | 0.973 |
Ljam_1060 | coaD | Ljam_1060 | Ljam_1603 | Polyketide synthase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.528 |
Ljam_1060 | coaE | Ljam_1060 | Ljam_2460 | Polyketide synthase. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.835 |
Ljam_1060 | polA | Ljam_1060 | Ljam_2062 | Polyketide synthase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.797 |
Ljam_2461 | Ljam_2462 | Ljam_2461 | Ljam_2462 | Hypothetical protein. | Rtn protein. | 0.802 |
Ljam_2461 | bioA | Ljam_2461 | Ljam_2463 | Hypothetical protein. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.802 |
Ljam_2461 | bioH_2 | Ljam_2461 | Ljam_2466 | Hypothetical protein. | Biotin biosynthesis protein BioH. | 0.620 |
Ljam_2461 | coaE | Ljam_2461 | Ljam_2460 | Hypothetical protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.802 |
Ljam_2461 | zapD | Ljam_2461 | Ljam_2459 | Hypothetical protein. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.531 |
Ljam_2462 | Ljam_2461 | Ljam_2462 | Ljam_2461 | Rtn protein. | Hypothetical protein. | 0.802 |
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