STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2512Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (471 aa)    
Predicted Functional Partners:
Ljam_1122
Hypothetical protein.
  
  
 0.945
Ljam_0332
Naringenin-chalcone synthase.
    
   0.531
Ljam_1592
Naringenin-chalcone synthase.
    
   0.531
Ljam_1813
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.526
ycgE
HTH-type transcriptional repressor YcgE.
 
  
 0.486
Ljam_1656
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.481
Ljam_2917
NAD-dependent epimerase/dehydratase.
     
 0.470
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
       0.459
Ljam_0503
Polyketide synthase.
  
 
 0.455
Ljam_1060
Polyketide synthase.
  
 
 0.455
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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