STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2538Isochorismatase family protein. (226 aa)    
Predicted Functional Partners:
nfdA
N-substituted formamide deformylase precursor.
 
     0.912
Ljam_1060
Polyketide synthase.
 
 0.800
Ljam_0503
Polyketide synthase.
 
 0.798
apc3
Acetophenone carboxylase gamma subunit.
    
  0.710
Ljam_2281
YcaC related amidohydrolase.
  
     0.648
trpE
Anthranilate synthase.
    
  0.575
Ljam_2679
D-xylose reductase III.
   
 
  0.518
nadE
Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.516
osmC
Peroxiredoxin OsmC.
   
    0.483
Ljam_0700
Putative Antitoxin higA-2.
   
    0.452
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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