Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traJTraJ protein. (117 aa)    
Predicted Functional Partners:
traI
TraI protein.
 
   
 0.972
traL
traL protein.
 
     0.862
traC
DNA primase traC.
 
     0.828
trbL
Conjugal transfer protein TrbL.
 
     0.804
traF
Conjugal transfer protein TraF.
 
     0.802
traG
Conjugal transfer protein TraG.
 
     0.798
trbD
Conjugal transfer protein trbD.
  
     0.774
trbF
Conjugal transfer protein trbF.
  
     0.773
trbI
Conjugal transfer protein TrbI.
  
     0.771
trbG
Conjugal transfer protein TrbG.
  
     0.771
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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