STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traCDNA primase traC. (732 aa)    
Predicted Functional Partners:
traF
Conjugal transfer protein TraF.
 
     0.968
traG
Conjugal transfer protein TraG.
 
     0.968
trbL
Conjugal transfer protein TrbL.
 
     0.968
trbI
Conjugal transfer protein TrbI.
 
     0.956
trbG
Conjugal transfer protein TrbG.
 
     0.956
trbF
Conjugal transfer protein trbF.
 
     0.956
trbE
Conjugal transfer protein TrbE.
 
     0.954
trbD
Conjugal transfer protein trbD.
 
     0.949
virB
LvhB11.
 
     0.949
traD
TraD protein.
       0.866
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.