Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0267 | Ljam_0888 | Ljam_0267 | Ljam_0888 | ATPase or kinase. | Translation factor; Belongs to the SUA5 family. | 0.589 |
Ljam_0267 | Ljam_1260 | Ljam_0267 | Ljam_1260 | ATPase or kinase. | O-sialoglycoprotein endopeptidase. | 0.990 |
Ljam_0267 | Ljam_2623 | Ljam_0267 | Ljam_2623 | ATPase or kinase. | Translation initiation protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.640 |
Ljam_0267 | dnaG | Ljam_0267 | Ljam_2599 | ATPase or kinase. | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.445 |
Ljam_0267 | gcp | Ljam_0267 | Ljam_2602 | ATPase or kinase. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.958 |
Ljam_0888 | Ljam_0267 | Ljam_0888 | Ljam_0267 | Translation factor; Belongs to the SUA5 family. | ATPase or kinase. | 0.589 |
Ljam_0888 | Ljam_1260 | Ljam_0888 | Ljam_1260 | Translation factor; Belongs to the SUA5 family. | O-sialoglycoprotein endopeptidase. | 0.636 |
Ljam_0888 | gcp | Ljam_0888 | Ljam_2602 | Translation factor; Belongs to the SUA5 family. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.605 |
Ljam_1260 | Ljam_0267 | Ljam_1260 | Ljam_0267 | O-sialoglycoprotein endopeptidase. | ATPase or kinase. | 0.990 |
Ljam_1260 | Ljam_0888 | Ljam_1260 | Ljam_0888 | O-sialoglycoprotein endopeptidase. | Translation factor; Belongs to the SUA5 family. | 0.636 |
Ljam_1260 | Ljam_2623 | Ljam_1260 | Ljam_2623 | O-sialoglycoprotein endopeptidase. | Translation initiation protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.589 |
Ljam_1260 | gcp | Ljam_1260 | Ljam_2602 | O-sialoglycoprotein endopeptidase. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.986 |
Ljam_1260 | pheT | Ljam_1260 | Ljam_0278 | O-sialoglycoprotein endopeptidase. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.423 |
Ljam_2623 | Ljam_0267 | Ljam_2623 | Ljam_0267 | Translation initiation protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | ATPase or kinase. | 0.640 |
Ljam_2623 | Ljam_1260 | Ljam_2623 | Ljam_1260 | Translation initiation protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | O-sialoglycoprotein endopeptidase. | 0.589 |
Ljam_2623 | gcp | Ljam_2623 | Ljam_2602 | Translation initiation protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.605 |
dnaG | Ljam_0267 | Ljam_2599 | Ljam_0267 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | ATPase or kinase. | 0.445 |
dnaG | gcp | Ljam_2599 | Ljam_2602 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.776 |
dnaG | pheS | Ljam_2599 | Ljam_0279 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.473 |
dnaG | pheT | Ljam_2599 | Ljam_0278 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.617 |
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