STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2683Pyridine nucleotide-disulfide oxidoreductase. (348 aa)    
Predicted Functional Partners:
atpA
ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.784
fadH
2,4-dienoyl-CoA reductase FadH1.
     
 0.766
Ljam_0503
Polyketide synthase.
 
 0.720
Ljam_1060
Polyketide synthase.
 
 0.719
Ljam_0645
Hypothetical protein.
  
    0.682
Ljam_2681
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.594
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.594
Ljam_2684
Aminoglycoside 6-adenylyltransferase.
       0.545
Ljam_1460
Polyketide synthase.
  
  
 0.512
Ljam_1459
Non-ribosomal peptide synthetase/polyketide synthetase.
  
  
 0.476
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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