STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2690Metal-dependent hydrolase of the beta-lactamase superfamily transporter III. (251 aa)    
Predicted Functional Partners:
Ljam_0125
Protein IcmE (DotG).
  
     0.619
egl
Endoglucanase precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.572
Ljam_1834
Sensor histidine kinase.
 
     0.521
Ljam_2058
Serine/threonine protein kinase.
     
 0.472
polX
DNA polymerase/3'-5' exonuclease PolX.
  
    0.451
comA
DNA uptake/competence protein ComA.
       0.450
Ljam_2689
Patatin-like phospholipase.
       0.450
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.415
Ljam_0340
Hypothetical protein.
  
     0.411
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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