Ljam_2702 protein (Legionella jamestowniensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Ljam_2702

Alanine racemase. (374 aa)

Predicted Functional Partners:

Ljam_0724

0.553

Ljam_2703

0.550

eda

0.521

Ljam_0380

0.467

Ljam_0450

0.467

Ljam_1125

0.434

Ljam_2695

0.434

lysN

0.433

nagK

0.427

pdxB

0.427

Your Current Organism:

Legionella jamestowniensis

NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ljam_0380	Ljam_0450	Ljam_0380	Ljam_0450	Hypothetical protein.	Cytokinin oxidase.	0.459
Ljam_0380	Ljam_1125	Ljam_0380	Ljam_1125	Hypothetical protein.	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	0.443
Ljam_0380	Ljam_2695	Ljam_0380	Ljam_2695	Hypothetical protein.	2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.443
Ljam_0380	Ljam_2702	Ljam_0380	Ljam_2702	Hypothetical protein.	Alanine racemase.	0.467
Ljam_0380	eda	Ljam_0380	Ljam_0729	Hypothetical protein.	2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.	0.469
Ljam_0380	lysN	Ljam_0380	Ljam_1451	Hypothetical protein.	2-aminoadipate transaminase.	0.436
Ljam_0450	Ljam_0380	Ljam_0450	Ljam_0380	Cytokinin oxidase.	Hypothetical protein.	0.459
Ljam_0450	Ljam_1125	Ljam_0450	Ljam_1125	Cytokinin oxidase.	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	0.619
Ljam_0450	Ljam_2695	Ljam_0450	Ljam_2695	Cytokinin oxidase.	2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.443
Ljam_0450	Ljam_2702	Ljam_0450	Ljam_2702	Cytokinin oxidase.	Alanine racemase.	0.467
Ljam_0450	eda	Ljam_0450	Ljam_0729	Cytokinin oxidase.	2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.	0.469
Ljam_0450	lysN	Ljam_0450	Ljam_1451	Cytokinin oxidase.	2-aminoadipate transaminase.	0.436
Ljam_0724	Ljam_1125	Ljam_0724	Ljam_1125	Cysteine synthase.	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	0.462
Ljam_0724	Ljam_2695	Ljam_0724	Ljam_2695	Cysteine synthase.	2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.462
Ljam_0724	Ljam_2702	Ljam_0724	Ljam_2702	Cysteine synthase.	Alanine racemase.	0.553
Ljam_0724	pdxB	Ljam_0724	Ljam_1367	Cysteine synthase.	Erythronate-4-phosphate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.541
Ljam_1125	Ljam_0380	Ljam_1125	Ljam_0380	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	Hypothetical protein.	0.443
Ljam_1125	Ljam_0450	Ljam_1125	Ljam_0450	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	Cytokinin oxidase.	0.619
Ljam_1125	Ljam_0724	Ljam_1125	Ljam_0724	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	Cysteine synthase.	0.462
Ljam_1125	Ljam_2702	Ljam_1125	Ljam_2702	NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.	Alanine racemase.	0.434

page 1 of 4

Server load: medium (42%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About