Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0041 | Ljam_2755 | Ljam_0041 | Ljam_2755 | Hypothetical protein. | Hypothetical protein. | 0.404 |
Ljam_0076 | Ljam_2755 | Ljam_0076 | Ljam_2755 | Putative chaperone-modulator protein CbpM. | Hypothetical protein. | 0.599 |
Ljam_2755 | Ljam_0041 | Ljam_2755 | Ljam_0041 | Hypothetical protein. | Hypothetical protein. | 0.404 |
Ljam_2755 | Ljam_0076 | Ljam_2755 | Ljam_0076 | Hypothetical protein. | Putative chaperone-modulator protein CbpM. | 0.599 |
Ljam_2755 | Ljam_2756 | Ljam_2755 | Ljam_2756 | Hypothetical protein. | Hypothetical protein. | 0.747 |
Ljam_2755 | Ljam_2759 | Ljam_2755 | Ljam_2759 | Hypothetical protein. | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.415 |
Ljam_2755 | proC | Ljam_2755 | Ljam_2758 | Hypothetical protein. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.438 |
Ljam_2755 | yggT | Ljam_2755 | Ljam_2757 | Hypothetical protein. | YggT family protein. | 0.606 |
Ljam_2756 | Ljam_2755 | Ljam_2756 | Ljam_2755 | Hypothetical protein. | Hypothetical protein. | 0.747 |
Ljam_2756 | Ljam_2759 | Ljam_2756 | Ljam_2759 | Hypothetical protein. | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.434 |
Ljam_2756 | proC | Ljam_2756 | Ljam_2758 | Hypothetical protein. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.458 |
Ljam_2756 | yggT | Ljam_2756 | Ljam_2757 | Hypothetical protein. | YggT family protein. | 0.645 |
Ljam_2759 | Ljam_2755 | Ljam_2759 | Ljam_2755 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Hypothetical protein. | 0.415 |
Ljam_2759 | Ljam_2756 | Ljam_2759 | Ljam_2756 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Hypothetical protein. | 0.434 |
Ljam_2759 | proC | Ljam_2759 | Ljam_2758 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.813 |
Ljam_2759 | yggT | Ljam_2759 | Ljam_2757 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | YggT family protein. | 0.807 |
proC | Ljam_2755 | Ljam_2758 | Ljam_2755 | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | Hypothetical protein. | 0.438 |
proC | Ljam_2756 | Ljam_2758 | Ljam_2756 | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | Hypothetical protein. | 0.458 |
proC | Ljam_2759 | Ljam_2758 | Ljam_2759 | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.813 |
proC | yggT | Ljam_2758 | Ljam_2757 | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | YggT family protein. | 0.636 |
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