Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_0938 | metN | Ljam_0938 | Ljam_2834 | Toxin secretion ATP binding protein. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.806 |
| Ljam_1975 | ftsE | Ljam_1975 | Ljam_0240 | ABC transporter permease. | Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.885 |
| Ljam_1975 | metN | Ljam_1975 | Ljam_2834 | ABC transporter permease. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.724 |
| Ljam_2335 | metN | Ljam_2335 | Ljam_2834 | Hypothetical protein; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.812 |
| Ljam_2832 | metI | Ljam_2832 | Ljam_2833 | 29 kDa immunogenic protein. | Putative D-methionine transport system permease protein metI. | 0.999 |
| Ljam_2832 | metK | Ljam_2832 | Ljam_2738 | 29 kDa immunogenic protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.466 |
| Ljam_2832 | metN | Ljam_2832 | Ljam_2834 | 29 kDa immunogenic protein. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.999 |
| cysK | metC | Ljam_1795 | Ljam_0446 | Cystathionine beta synthase. | Cystathionine beta-lyase. | 0.987 |
| cysK | metN | Ljam_1795 | Ljam_2834 | Cystathionine beta synthase. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.677 |
| cysK | ycgE | Ljam_1795 | Ljam_0579 | Cystathionine beta synthase. | HTH-type transcriptional repressor YcgE. | 0.732 |
| ftsE | Ljam_1975 | Ljam_0240 | Ljam_1975 | Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division. | ABC transporter permease. | 0.885 |
| ftsE | metI | Ljam_0240 | Ljam_2833 | Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division. | Putative D-methionine transport system permease protein metI. | 0.580 |
| ftsE | metN | Ljam_0240 | Ljam_2834 | Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.582 |
| metC | cysK | Ljam_0446 | Ljam_1795 | Cystathionine beta-lyase. | Cystathionine beta synthase. | 0.987 |
| metC | metK | Ljam_0446 | Ljam_2738 | Cystathionine beta-lyase. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.728 |
| metC | metN | Ljam_0446 | Ljam_2834 | Cystathionine beta-lyase. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.671 |
| metC | ycgE | Ljam_0446 | Ljam_0579 | Cystathionine beta-lyase. | HTH-type transcriptional repressor YcgE. | 0.781 |
| metI | Ljam_2832 | Ljam_2833 | Ljam_2832 | Putative D-methionine transport system permease protein metI. | 29 kDa immunogenic protein. | 0.999 |
| metI | ftsE | Ljam_2833 | Ljam_0240 | Putative D-methionine transport system permease protein metI. | Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.580 |
| metI | metN | Ljam_2833 | Ljam_2834 | Putative D-methionine transport system permease protein metI. | Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.999 |
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