STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Ljam_2839Putative hydrolase. (290 aa)    
Predicted Functional Partners:
aguA
Peptidylarginine deiminase.
 
 0.999
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.922
acsA
acetyl-CoA synthetase.
  
 
  0.874
Ljam_2320
Spermidine synthase.
  
 
  0.843
Ljam_2841
Acyl CoA carboxylase subunit alpha.
   
  0.781
Ljam_0503
Polyketide synthase.
   
 0.701
Ljam_1060
Polyketide synthase.
   
 0.701
hmgcll
Putative 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2.
  
    0.667
nitA
Nitrilase.
  
  
0.649
Ljam_2842
enoyl-CoA hydratase.
   
   0.645
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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