Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_1401 | Ljam_2907 | Ljam_1401 | Ljam_2907 | Putative iron-sulpher cluster proteins NifU. | Rrf2 family transporter protein. | 0.597 |
| Ljam_1401 | djlA | Ljam_1401 | Ljam_2874 | Putative iron-sulpher cluster proteins NifU. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.979 |
| Ljam_1401 | dnaK | Ljam_1401 | Ljam_2735 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.926 |
| Ljam_1401 | erpA | Ljam_1401 | Ljam_0818 | Putative iron-sulpher cluster proteins NifU. | Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.684 |
| Ljam_1401 | iscS | Ljam_1401 | Ljam_1402 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase NifS. | 0.999 |
| Ljam_1401 | sufA | Ljam_1401 | Ljam_1400 | Putative iron-sulpher cluster proteins NifU. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.933 |
| Ljam_2875 | djlA | Ljam_2875 | Ljam_2874 | 3-deoxy-D-manno-oct-2-ulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.552 |
| Ljam_2907 | Ljam_1401 | Ljam_2907 | Ljam_1401 | Rrf2 family transporter protein. | Putative iron-sulpher cluster proteins NifU. | 0.597 |
| Ljam_2907 | djlA | Ljam_2907 | Ljam_2874 | Rrf2 family transporter protein. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.576 |
| Ljam_2907 | dnaK | Ljam_2907 | Ljam_2735 | Rrf2 family transporter protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.436 |
| Ljam_2907 | iscS | Ljam_2907 | Ljam_1402 | Rrf2 family transporter protein. | Cysteine desulfurase NifS. | 0.974 |
| Ljam_2907 | nifU | Ljam_2907 | Ljam_2912 | Rrf2 family transporter protein. | Nitrogen fixation protein NifU. | 0.985 |
| Ljam_2907 | sufA | Ljam_2907 | Ljam_1400 | Rrf2 family transporter protein. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.792 |
| djlA | Ljam_1401 | Ljam_2874 | Ljam_1401 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Putative iron-sulpher cluster proteins NifU. | 0.979 |
| djlA | Ljam_2875 | Ljam_2874 | Ljam_2875 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 3-deoxy-D-manno-oct-2-ulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.552 |
| djlA | Ljam_2907 | Ljam_2874 | Ljam_2907 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Rrf2 family transporter protein. | 0.576 |
| djlA | dnaK | Ljam_2874 | Ljam_2735 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.951 |
| djlA | erpA | Ljam_2874 | Ljam_0818 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.801 |
| djlA | grlA | Ljam_2874 | Ljam_1812 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.669 |
| djlA | htpG | Ljam_2874 | Ljam_0841 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity. | 0.490 |
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