Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ljam_2885Response regulator GacA. (219 aa)    
Predicted Functional Partners:
Ljam_1150
Sensory box histidine kinase/response regulator.
 
 
 0.978
gacS/letS
Transmission sensor LetS.
 
 
0.978
Ljam_0431
Sensory box histidine kinase/response regulator.
 
 
 0.977
Ljam_0183
Sensory box histidine kinase/response regulator.
 
 
 0.976
Ljam_1227
Sensory box histidine kinase/response regulator.
 
 
 0.976
fixL
Sensor histidine kinase.
 
 
0.840
fleQ
Transcriptional regulator FleQ.
   
 0.777
Ljam_0073
GGDEF domain-containing sensory box protein.
 
 0.763
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
 
 0.762
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.752
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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