STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2913Metal-sulfur cluster biosynthetic enzyme. (111 aa)    
Predicted Functional Partners:
Ljam_2909
ATP transporter ATP- binding protein.
 
  
 0.945
nifU
Nitrogen fixation protein NifU.
 
    0.943
Ljam_2910
ABC transporter permease.
 
   
 0.933
Ljam_2908
Cysteine desulfurase.
 
   
 0.926
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.910
Ljam_2907
Rrf2 family transporter protein.
       0.802
Ljam_2914
lysyl-tRNA synthetase, class II.
       0.802
Ljam_2628
Phenol hydroxylase.
  
 
 0.706
Ljam_1401
Putative iron-sulpher cluster proteins NifU.
  
    0.693
Ljam_1867
Hypothetical protein.
  
 
 0.684
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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