Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0130 | Ljam_1805 | Ljam_0130 | Ljam_1805 | Protein IcmB (DotO). | Coiled-coil protein. | 0.669 |
Ljam_0130 | Ljam_2918 | Ljam_0130 | Ljam_2918 | Protein IcmB (DotO). | Recombinase B. | 0.493 |
Ljam_0405 | Ljam_1805 | Ljam_0405 | Ljam_1805 | ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. | Coiled-coil protein. | 0.404 |
Ljam_0405 | Ljam_2918 | Ljam_0405 | Ljam_2918 | ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. | Recombinase B. | 0.998 |
Ljam_1805 | Ljam_0130 | Ljam_1805 | Ljam_0130 | Coiled-coil protein. | Protein IcmB (DotO). | 0.669 |
Ljam_1805 | Ljam_0405 | Ljam_1805 | Ljam_0405 | Coiled-coil protein. | ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.404 |
Ljam_1805 | Ljam_2918 | Ljam_1805 | Ljam_2918 | Coiled-coil protein. | Recombinase B. | 0.525 |
Ljam_2916 | Ljam_2917 | Ljam_2916 | Ljam_2917 | Nucleoside-diphosphate sugar epimerase. | NAD-dependent epimerase/dehydratase. | 0.809 |
Ljam_2916 | Ljam_2918 | Ljam_2916 | Ljam_2918 | Nucleoside-diphosphate sugar epimerase. | Recombinase B. | 0.700 |
Ljam_2916 | Ljam_2919 | Ljam_2916 | Ljam_2919 | Nucleoside-diphosphate sugar epimerase. | Hypothetical protein. | 0.681 |
Ljam_2916 | Ljam_2920 | Ljam_2916 | Ljam_2920 | Nucleoside-diphosphate sugar epimerase. | Hypothetical protein. | 0.579 |
Ljam_2917 | Ljam_2916 | Ljam_2917 | Ljam_2916 | NAD-dependent epimerase/dehydratase. | Nucleoside-diphosphate sugar epimerase. | 0.809 |
Ljam_2917 | Ljam_2918 | Ljam_2917 | Ljam_2918 | NAD-dependent epimerase/dehydratase. | Recombinase B. | 0.732 |
Ljam_2917 | Ljam_2919 | Ljam_2917 | Ljam_2919 | NAD-dependent epimerase/dehydratase. | Hypothetical protein. | 0.681 |
Ljam_2917 | Ljam_2920 | Ljam_2917 | Ljam_2920 | NAD-dependent epimerase/dehydratase. | Hypothetical protein. | 0.579 |
Ljam_2917 | ankK | Ljam_2917 | Ljam_2921 | NAD-dependent epimerase/dehydratase. | Substrate of the Dot/Icm secretion system. | 0.452 |
Ljam_2918 | Ljam_0130 | Ljam_2918 | Ljam_0130 | Recombinase B. | Protein IcmB (DotO). | 0.493 |
Ljam_2918 | Ljam_0405 | Ljam_2918 | Ljam_0405 | Recombinase B. | ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.998 |
Ljam_2918 | Ljam_1805 | Ljam_2918 | Ljam_1805 | Recombinase B. | Coiled-coil protein. | 0.525 |
Ljam_2918 | Ljam_2916 | Ljam_2918 | Ljam_2916 | Recombinase B. | Nucleoside-diphosphate sugar epimerase. | 0.700 |
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