STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM74585.1Cysteine desulfurase. (411 aa)    
Predicted Functional Partners:
SFO08232.1
Nitrogen fixation protein NifU.
  
 0.999
SFN57646.1
Adenylyltransferase and sulfurtransferase.
 
 
 0.959
mnmA
tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
 
 0.951
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
   
 0.939
SFM46886.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.902
SFM47092.1
Ferredoxin-NADP reductase.
  
 0.902
SFN06956.1
Ferredoxin-NADP reductase.
  
 0.902
SFN07101.1
Vanillate O-demethylase ferredoxin subunit.
  
 0.902
SFO67568.1
3-ketosteroid 9alpha-monooxygenase subunit B.
  
 0.902
SFO77653.1
3-ketosteroid 9alpha-monooxygenase subunit B.
  
 0.902
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.