STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM53349.1Phytoene synthase. (287 aa)    
Predicted Functional Partners:
SFM53322.1
Squalene-associated FAD-dependent desaturase.
  
 0.991
SFM53290.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 0.979
SFO70064.1
Phytoene desaturase.
 
 
 0.969
SFM53262.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
 
 0.958
SFM53237.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
 
   
 0.923
SFM53376.1
Squalene synthase HpnC.
 
   
0.916
SFM53216.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
     0.910
SFO26192.1
S-adenosyl methyltransferase.
  
 
 0.892
SFM60236.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 0.888
SFO02411.1
Heptaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.880
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.