STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN28845.1Putative adhesin. (280 aa)    
Predicted Functional Partners:
SFN96129.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
  
 0.815
SFN28751.1
Protein of unknown function.
 
  
 0.658
SFN28803.1
DNA-binding transcriptional regulator YbjK.
 
     0.600
SFO61067.1
Hypothetical protein.
  
     0.586
SFO09731.1
Hypothetical protein.
  
     0.572
SFO65931.1
Streptogrisin C.
  
 
   0.566
SFN96094.1
Signal transduction histidine kinase.
  
  
 0.561
SFN34278.1
Hypothetical protein.
  
 
   0.559
SFO45252.1
Hypothetical protein.
  
     0.550
SFO45494.1
Streptogrisin C.
  
 
   0.541
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.