STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN45467.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
SFN45490.1
Helix-turn-helix domain-containing protein.
 
     0.927
SFN45519.1
Hypothetical protein.
 
    0.923
SFN17626.1
Helix-turn-helix domain-containing protein.
 
     0.684
SFN17607.1
Hypothetical protein.
 
    0.672
SFO61366.1
Hypothetical protein.
 
    0.667
SFN45545.1
Hypothetical protein.
 
     0.639
SFO55233.1
Hypothetical protein.
  
     0.600
SFO61320.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.538
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.512
SFN42327.1
ATP-dependent DNA helicase RecQ.
  
  
 0.504
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.