STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN66017.1Lanthionine synthetase C-like protein. (415 aa)    
Predicted Functional Partners:
SFN66057.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
   
 0.968
SFN65976.1
protein-L-isoaspartate(D-aspartate) O-methyltransferase.
 
     0.930
SFN65939.1
Hypothetical protein.
       0.778
SFN65898.1
protein-L-isoaspartate(D-aspartate) O-methyltransferase.
 
     0.674
SFM78378.1
Hypothetical protein.
  
     0.537
SFN66094.1
FxLD family lantipeptide.
       0.527
SFO38767.1
Amidase; Belongs to the amidase family.
  
     0.521
SFN27136.1
Phosphotransferase enzyme family protein.
  
     0.506
SFN16657.1
RES domain-containing protein.
  
     0.499
SFM36467.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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