STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN96569.1Two component transcriptional regulator, LuxR family. (198 aa)    
Predicted Functional Partners:
SFP06754.1
Signal transduction histidine kinase.
   
 0.864
SFN19734.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.843
SFO41972.1
Signal transduction histidine kinase.
  
  0.804
SFN16846.1
Signal transduction histidine kinase.
  
  0.789
SFN34914.1
Signal transduction histidine kinase.
  
  0.789
SFM54957.1
Signal transduction histidine kinase.
  
  0.784
SFM96153.1
Signal transduction histidine kinase.
  
  0.781
SFN82512.1
Two-component system, NarL family, response regulator DesR.
  
  
  0.780
SFM50486.1
Signal transduction histidine kinase.
  
  0.776
SFO23081.1
Signal transduction histidine kinase.
  
  0.775
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.