STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO42420.14-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family. (342 aa)    
Predicted Functional Partners:
SFO42465.1
Glycine/D-amino acid oxidase.
 
  
  0.984
SFO42435.1
Thioredoxin reductase.
 
  
  0.976
SFO42449.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  
  0.961
SFO42405.1
Proline racemase; Belongs to the proline racemase family.
 
     0.949
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.857
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.818
SFN71692.1
NADP-dependent aldehyde dehydrogenase.
  
 
  0.716
SFN80737.1
NADP-dependent aldehyde dehydrogenase.
  
 
  0.687
SFO70389.1
Glucokinase.
  
 
  0.684
SFO92189.1
NADP-dependent aldehyde dehydrogenase.
  
 
  0.675
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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