STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO45117.1Hypothetical protein. (267 aa)    
Predicted Functional Partners:
SFO45131.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.835
SFO03701.1
Protein of unknown function.
  
     0.647
purK
5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.620
SFN25169.1
Hypothetical protein.
  
     0.619
SFM37173.1
Hypothetical protein.
  
     0.605
SFO94780.1
Glycosyl transferase family 2.
  
     0.604
SFO29736.1
Hypothetical protein.
  
     0.601
SFM96271.1
Protein of unknown function.
  
     0.582
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.572
SFM60342.1
Protein of unknown function.
  
     0.571
Your Current Organism:
Saccharopolyspora antimicrobica
NCBI taxonomy Id: 455193
Other names: CCM 7463, DSM 45119, JCM 16610, KCTC 19303, S. antimicrobica, Saccharopolyspora antimicrobica Yuan et al. 2008, strain I05-00074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.