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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0Q3VC74Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (333 aa)    
Predicted Functional Partners:
K3XDP1_SETIT
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
     
 0.564
A0A368R167
E2_bind domain-containing protein.
    
 0.527
K3XGP2_SETIT
E2_bind domain-containing protein.
    
 0.527
A0A368R526
Ubiquitin-like domain-containing protein.
   
  0.516
A0A368S088
Ubiquitin-like domain-containing protein.
   
  0.516
A0A368SD91
Ubiquitin-like domain-containing protein.
   
  0.516
K3XMT6_SETIT
Ubiquitin-like domain-containing protein.
   
  0.516
K3YC38_SETIT
Ubiquitin-like domain-containing protein.
   
  0.516
K4AMP3_SETIT
Ubiquitin-like domain-containing protein.
   
  0.516
K4A6L0_SETIT
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
     
 0.515
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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