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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368PIV2Uncharacterized protein. (535 aa)    
Predicted Functional Partners:
A0A368PNA6
Nuclear cap-binding protein subunit 2.
    
 0.545
K3YYA2_SETIT
Nuclear cap-binding protein subunit 2.
    
 0.545
K3ZUH9_SETIT
Uncharacterized protein.
   
 
 0.531
K3Z7C0_SETIT
Uncharacterized protein.
    
   0.513
A0A368SQZ9
MIF4G domain-containing protein.
    
 0.512
K4AKQ7_SETIT
MIF4G domain-containing protein.
    
 0.512
A0A368PJW9
Uncharacterized protein.
   
 0.480
K3Z8B0_SETIT
RRM domain-containing protein.
   
 
 0.458
A0A368PZ06
RPOLD domain-containing protein.
   
 
  0.424
K4A2L4_SETIT
RPOLD domain-containing protein.
   
 
  0.424
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.