Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A368PJS1Uncharacterized protein. (192 aa)    
Predicted Functional Partners:
K3YU59_SETIT
Nudix hydrolase domain-containing protein.
   
 0.965
K3Y846_SETIT
Uncharacterized protein.
    
 0.906
K3ZU68_SETIT
WH1 domain-containing protein.
    
 0.906
K4AAP8_SETIT
Uncharacterized protein.
    
 0.906
K3YB45_SETIT
Sm domain-containing protein.
    
 0.887
K3ZB47_SETIT
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.870
K4A804_SETIT
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 
 0.866
K4AED5_SETIT
RNase_PH domain-containing protein.
    
 0.850
A0A368R1T2
Uncharacterized protein.
    
 0.836
A0A368RIM6
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.
    
 0.836
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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