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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368PKB9NAM-associated domain-containing protein. (362 aa)    
Predicted Functional Partners:
A0A368SKH4
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.793
K3YPZ4_SETIT
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.793
K4A5Z4_SETIT
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.793
A0A368SPQ6
EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.627
K3ZWN9_SETIT
EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.627
K3ZWQ4_SETIT
EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.627
A0A368PZ06
RPOLD domain-containing protein.
   
 
 0.474
K3XJ25_SETIT
RPOLD domain-containing protein.
   
 
 0.474
K3ZUD5_SETIT
RPOLD domain-containing protein.
   
 
 0.474
K4A2L4_SETIT
RPOLD domain-containing protein.
   
 
 0.474
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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