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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368PL50Uncharacterized protein. (956 aa)    
Predicted Functional Partners:
K3Z340_SETIT
Uncharacterized protein.
  
  0.584
K3YU36_SETIT
Uncharacterized protein.
      
 0.564
A0A368SJP6
SAP domain-containing protein.
  
 
  0.518
K4A1Q1_SETIT
Epimerase domain-containing protein.
      
 0.499
K3ZPY2_SETIT
Uncharacterized protein.
  
 
  0.484
K3ZQ27_SETIT
CPSF_A domain-containing protein.
  
 
   0.478
A0A368PX36
CPSF_A domain-containing protein.
  
 
   0.477
K4A8Z5_SETIT
SAP domain-containing protein.
  
 
  0.477
A0A368T087
Med12 domain-containing protein.
  
 
 
 0.474
K3Z4J2_SETIT
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
  
 
   0.462
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.