Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QB08Uncharacterized protein. (536 aa)    
Predicted Functional Partners:
A0A368Q136
LRRNT_2 domain-containing protein.
  
  
  0.525
A0A368QW80
Uncharacterized protein.
  
  
  0.525
K4A1I5_SETIT
LRRNT_2 domain-containing protein.
  
  
  0.519
K3YZV2_SETIT
Uncharacterized protein.
  
     0.515
K3ZPT6_SETIT
Uncharacterized protein.
  
     0.510
A0A368REE6
LRRNT_2 domain-containing protein.
  
     0.509
A0A368RZ02
Uncharacterized protein.
  
  
  0.507
A0A368R3K9
Uncharacterized protein.
  
     0.504
A0A0Q3PEZ1
Uncharacterized protein.
  
     0.495
K3Z594_SETIT
Uncharacterized protein.
  
     0.490
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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