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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QL21Uncharacterized protein. (1062 aa)    
Predicted Functional Partners:
K4A5P4_SETIT
Nuclear pore protein.
   
 0.933
K3ZTK9_SETIT
Nup54 domain-containing protein.
   
 0.929
K3XK21_SETIT
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.928
K3YP94_SETIT
DUF5311 domain-containing protein.
   
 0.926
K3ZGZ9_SETIT
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.897
A0A368PHL2
Uncharacterized protein.
   
 0.893
K3YP82_SETIT
Uncharacterized protein.
   
 0.893
K4A4X2_SETIT
Uncharacterized protein.
   
 0.876
K3XSI2_SETIT
WD_REPEATS_REGION domain-containing protein.
   
 0.871
K3Z7N1_SETIT
WD_REPEATS_REGION domain-containing protein.
   
 0.871
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.