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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QLK9Uncharacterized protein. (614 aa)    
Predicted Functional Partners:
K3Y1W3_SETIT
Neprosin domain-containing protein.
  
     0.535
K4ALH3_SETIT
zf-C3HC4 domain-containing protein.
  
     0.523
A0A368RHI7
Uncharacterized protein.
  
     0.503
K3XK80_SETIT
Uncharacterized protein.
  
     0.502
K3XTN6_SETIT
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.501
K3ZBZ7_SETIT
C2H2-type domain-containing protein.
  
     0.498
A0A368QK76
C2H2-type domain-containing protein.
  
     0.497
K3XQR5_SETIT
Neprosin domain-containing protein.
  
     0.496
K3YLP3_SETIT
MATH domain-containing protein.
  
     0.479
K3ZMF1_SETIT
Uncharacterized protein.
  
     0.478
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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