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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QLQ3AP2/ERF domain-containing protein. (417 aa)    
Predicted Functional Partners:
K3YSC4_SETIT
Uncharacterized protein.
    
 0.771
K3ZY22_SETIT
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 
 0.677
K3XF17_SETIT
Uncharacterized protein; Belongs to the actin family.
    
 0.656
A0A368QTC9
Uncharacterized protein.
   
 0.654
A0A368S7Y8
Uncharacterized protein.
   
 0.654
K3ZKA8_SETIT
Uncharacterized protein.
   
 0.654
K3XLR6_SETIT
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.630
K4A566_SETIT
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
    
 
 0.630
K4AF47_SETIT
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.630
A0A368PZ06
RPOLD domain-containing protein.
   
 0.607
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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