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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QLR0PseudoU_synth_2 domain-containing protein. (342 aa)    
Predicted Functional Partners:
K3Z9Y7_SETIT
Uncharacterized protein.
  
 
 0.821
K4AC33_SETIT
SpoU_methylase domain-containing protein.
  
 
 0.774
K3XZT5_SETIT
Uncharacterized protein.
    
 
 0.737
K3XZH2_SETIT
KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.
   
   0.732
K4AGR8_SETIT
L51_S25_CI-B8 domain-containing protein.
   
   0.721
K3Z4B5_SETIT
TRUD domain-containing protein.
    
 
 0.695
K3ZR46_SETIT
TRUD domain-containing protein.
    
 
 0.695
K3XMP9_SETIT
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.671
K3YVM5_SETIT
Uncharacterized protein.
   
   0.671
K3Z909_SETIT
Uncharacterized protein.
   
   0.671
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.