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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A368QLS4Uncharacterized protein. (836 aa)    
Predicted Functional Partners:
K3ZQJ2_SETIT
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.936
K3XI15_SETIT
DUF1767 domain-containing protein.
    
 0.924
K4A5C5_SETIT
ERCC4 domain-containing protein.
    
 0.788
K4ACA8_SETIT
PPIase cyclophilin-type domain-containing protein.
    
 0.788
A0A368PN67
RECA_2 domain-containing protein.
  
 0.721
A0A368PM09
Zinc-hook domain-containing protein.
  
 0.697
K3YPB6_SETIT
Zinc-hook domain-containing protein.
  
 0.697
K4A768_SETIT
Uncharacterized protein.
  
 0.687
K3XI98_SETIT
MPN domain-containing protein.
    
   0.670
A0A368RFP0
ERCC4 domain-containing protein.
    
 0.655
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.