STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
K3YWI1_SETITRPOL4c domain-containing protein. (143 aa)    
Predicted Functional Partners:
A0A368PF85
RNA_pol_L_2 domain-containing protein.
   
 0.963
A0A368PZ06
RPOLD domain-containing protein.
    
 0.959
A0A368QZQ6
Uncharacterized protein.
   
 0.955
A0A368SDR3
Uncharacterized protein.
   
 0.955
K3ZY22_SETIT
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 0.952
K3ZXR0_SETIT
RNA_pol_L_2 domain-containing protein.
   
 0.948
K3XZT8_SETIT
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.937
A0A368SHS6
Uncharacterized protein.
   
 0.934
K3ZXW0_SETIT
Uncharacterized protein.
   
 0.934
K4AEN2_SETIT
Uncharacterized protein.
   
 0.934
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.