STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
K3Z2W3_SETITRibosomal_S4 domain-containing protein. (162 aa)    
Predicted Functional Partners:
A0A368PEF5
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
 
 0.979
K3ZAK7_SETIT
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.979
K4AL94_SETIT
Uncharacterized protein.
  
 0.969
K3Z2L9_SETIT
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.965
K4AGE8_SETIT
Uncharacterized protein.
  
 
 0.965
K4AFM8_SETIT
Ribosomal_S10 domain-containing protein.
  
 0.964
K3Z925_SETIT
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.960
K3ZWC0_SETIT
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.960
K3XMF8_SETIT
S10_plectin domain-containing protein.
   
 0.958
K3YAA4_SETIT
S10_plectin domain-containing protein.
   
 0.958
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.