STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A194YMJ8Uncharacterized protein. (284 aa)    
Predicted Functional Partners:
C5YC04_SORBI
Uncharacterized protein.
  
     0.522
C5XGF9_SORBI
RING-type domain-containing protein.
  
     0.504
C5YIA0_SORBI
Uncharacterized protein.
  
     0.500
A0A1W0VWZ0
RING-type domain-containing protein.
  
     0.493
A0A194YN36
Uncharacterized protein.
  
     0.489
C5WMJ5_SORBI
Uncharacterized protein.
  
   
 0.489
C5YVH0_SORBI
Uncharacterized protein.
  
     0.487
C5X6I8_SORBI
Uncharacterized protein.
  
     0.485
A0A1B6QPM5
Uncharacterized protein.
  
     0.484
A0A1W0W125
Uncharacterized protein.
  
     0.484
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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