STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A194YSF4U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (280 aa)    
Predicted Functional Partners:
A0A1B6QKE9
Uncharacterized protein.
    
   0.897
A0A1B6PJI0
WD_REPEATS_REGION domain-containing protein.
    
   0.794
C5X3Z7_SORBI
Uncharacterized protein.
    
 
 0.705
C5Z7G6_SORBI
Uncharacterized protein.
    
 
 0.705
A0A194YJ21
SURP motif domain-containing protein.
    
   0.678
C5XGI1_SORBI
Uncharacterized protein.
    
   0.655
C5X1A0_SORBI
Uncharacterized protein.
    
   0.650
C5XGY3_SORBI
Uncharacterized protein.
    
   0.646
C5YNT7_SORBI
Uncharacterized protein.
    
   0.646
A0A1B6PFD2
RRM domain-containing protein.
    
 
 0.588
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.