STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6PBY1WH1 domain-containing protein. (370 aa)    
Predicted Functional Partners:
C5Z8E1_SORBI
Nudix hydrolase domain-containing protein.
    
 0.975
C5XZS6_SORBI
Uncharacterized protein.
    
 0.958
C5Z5N6_SORBI
Uncharacterized protein.
    
 0.948
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.945
C5X9A0_SORBI
Helicase ATP-binding domain-containing protein.
    
 0.933
C5Z2C6_SORBI
Uncharacterized protein.
    
 
 0.931
C5WWE0_SORBI
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.914
C5WWE1_SORBI
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.914
C5WTX4_SORBI
Uncharacterized protein.
  
  
 
0.905
C5X2N4_SORBI
WH1 domain-containing protein.
  
  
 
0.902
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.