STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6PFX4BHLH domain-containing protein. (427 aa)    
Predicted Functional Partners:
A0A1B6QIW0
Uncharacterized protein.
  
     0.497
C5YBA9_SORBI
PMEI domain-containing protein.
  
     0.489
A0A1Z5RK71
Uncharacterized protein.
  
     0.488
C5WM21_SORBI
Uncharacterized protein.
  
     0.486
C5XSW6_SORBI
Uncharacterized protein.
  
     0.481
A0A194YPS5
Uncharacterized protein.
  
     0.479
C5X0T3_SORBI
Uncharacterized protein.
  
     0.479
A0A194YNS3
Uncharacterized protein.
  
     0.473
C5Z772_SORBI
Uncharacterized protein.
  
     0.473
C5Z773_SORBI
Uncharacterized protein.
  
     0.468
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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