STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6Q1J6Uncharacterized protein. (494 aa)    
Predicted Functional Partners:
A0A194YLN1
Uncharacterized protein.
    
  0.710
C5XPR9_SORBI
TFIID_20kDa domain-containing protein.
   
  0.685
C5Z6R1_SORBI
Uncharacterized protein.
     
 0.625
A0A1B6Q1M8
Uncharacterized protein.
   
  0.608
A0A1Z5S8U8
Uncharacterized protein.
   
  0.608
A0A1Z5R404
Uncharacterized protein.
   
 0.605
C5WQW6_SORBI
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
     
 0.601
C5XJT2_SORBI
Uncharacterized protein.
   
 0.600
C5XGR0_SORBI
TAFII28 domain-containing protein.
    
  0.588
C5XQH8_SORBI
TFIID_20kDa domain-containing protein.
   
  0.583
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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