STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6Q243Uncharacterized protein. (583 aa)    
Predicted Functional Partners:
A0A1B6PMT2
CBF domain-containing protein.
    
  0.514
C5XN38_SORBI
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
    
  0.514
C5Z4F8_SORBI
PINc domain-containing protein.
    
  0.514
C5XI95_SORBI
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
  0.512
A0A1B6PJ51
Sas10 domain-containing protein.
    
  0.504
Sb0011s005460
Uncharacterized protein.
  
  0.503
C5X0P5_SORBI
Uncharacterized protein.
    
  0.494
C5WT96_SORBI
Uncharacterized protein.
   
 
  0.463
C5X389_SORBI
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
  0.463
A0A1B6PF54
Uncharacterized protein.
  
     0.462
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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